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DUAL-REGISTERED PROTOCOL // OSF PRE-REGISTERED (DOI: 10.17605/OSF.IO/VPS9D) · CLINICALTRIALS.GOV PRS IN PROGRESS · PROTOCOL ID: DS-CLIN-2026-RARE-RESOLVE · PLANNED N = 10,000

RARE-RESOLVE™ Registry.
Ending the diagnostic odyssey for orphan disease.

Over 350 million individuals worldwide live with a rare disease, facing an average 7-year diagnostic odyssey with over 8 misdiagnoses. RARE-RESOLVE™ is an observational DCT registry ($N=10,000$) applying Human Phenotype Ontology (HPO) deep graphs, whole-genome trio re-analysis, and DNA methylation epi-signatures under the DeepSensi Cognitive Engine. Participation in the clinical registry is 100% Free.

A family sits with a thick folder of a years-long diagnostic odyssey at a bright table; opposite them a clinical geneticist turns a monitor towards them showing abstract sequencing tracks.…

RESOLVE in the United States: in preparation (IRB submission in preparation, the first country to open).

N = 10,000
orphan & undiagnosed cohort
HPO & WGS
deep phenome-genome mapping
T_rare
multi-omic tensor engine
100% Free
clinical registry participation

Registry Strata

Three Core Orphan Disease Cohorts

Wide view of a genetics consultation: a clinical geneticist draws a family pedigree by hand on paper with the parents watching; printed trio-sequencing results lie on the table. Bright…
Cohort 1 · N = 4,000

Undiagnosed Multi-System Syndromes

Pediatric and young adult patients with severe multi-organ dysfunction who remain without a definitive diagnosis following negative or inconclusive standard WES/WGS. High-dimensional HPO phenome graph synthesis under DSS-001.

Cohort 2 · N = 3,000

Ultra-Rare Mendelian & N=1 Mutations

Orphan monogenic diseases with fewer than 1,000 documented cases worldwide (OMIM/Orphanet/EURORDIS). Modeling non-coding regulatory mutations, deep intronic splice variants, and structural copy number variations (CNVs).

Cohort 3 · N = 3,000

Episignature & Chromatin Remodeling Disorders

Imprinting defects, SWI/SNF complexopathies, and chromatin remodeling mutations. Genome-wide DNA methylation profiling (Epi-signatures) to classify variants of uncertain significance (VUS).

From routine care, ordered by each participant's own physicians, the registry also records urine organic acids.

Biomarkers & Outcomes

The T_rare Multi-Omic Tensor & Endpoints

A paediatric neurologist and a parent look together at an MRI sequence shown as abstract grey slices on a wall monitor; at a small table beside them the child is drawing, seen from behind.
Primary Outcome 1

Diagnostic Yield & VUS Reclassification

Proportion of previously unresolved cases achieving a definitive molecular diagnosis or pathogenic reclassification of Variants of Uncertain Significance (VUS) per ACMG guidelines.

Primary Outcome 2

Actionable Therapeutic Repurposing

Identification of targeted off-label small molecules, cofactor therapies, or metabolic bypass pathways under physician co-signature, turning intractable N=1 cases into treatable phenotypes.

Primary Outcome 3

Reduction in Diagnostic Burden

Quantifiable elimination of redundant invasive biopsies, exploratory surgeries, and uncoordinated subspecialty testing across the patient's care trajectory.

NeurologyEpileptologyNeuroimmunologyPediatric NeurologyAutoimmunityRheumatologyGastroenterologyCardiometabolismAutonomic HemodynamicsCellular BioenergeticsHepatologyClinical GeneticsRare DiseaseSupportive OncologyPharmacogenomicsGynecologyImmuno-EndocrinologyNeuro-Metabolic PsychiatryEPI-RESOLVENEURO-RESOLVEIMMUNO-RESOLVECARDIO-RESOLVEMETABO-RESOLVERARE-RESOLVEONCO-SHIELDENDO-RESOLVEMIND-RESOLVEConsilium
The reading room of a medical library: bookshelves receding towards the horizon, and in the foreground a long table with open volumes and printed papers full of pencil annotations. Tall…